Question: 3. (4 points): Individual assignment Consider global alignment with affine gap penalty function. Let the scoring scheme parameters be as follows: match score (m) =

3. (4 points): Individual assignment Consider global alignment with affine gap penalty function. Let the scoring scheme parameters be as follows: match score (m) = +1; mismatch penalty (m) = -2; gap opening penalty (h) = -5; gap extension penalty (9) = -1. Now, consider two alignments Aand A2 between the same two DNA sequences: (A1) Si: a C ca t t t ta - g - g - ct C S2: a c ga - t - ta gggggct C (A2) S: a cca t t t ta - - - g g ctc S2: a C ga - - t ta g 8 g g 8 ct c Compute the scores for these two alignments using the given scoring scheme. 3. (4 points): Individual assignment Consider global alignment with affine gap penalty function. Let the scoring scheme parameters be as follows: match score (m) = +1; mismatch penalty (m) = -2; gap opening penalty (h) = -5; gap extension penalty (9) = -1. Now, consider two alignments Aand A2 between the same two DNA sequences: (A1) Si: a C ca t t t ta - g - g - ct C S2: a c ga - t - ta gggggct C (A2) S: a cca t t t ta - - - g g ctc S2: a C ga - - t ta g 8 g g 8 ct c Compute the scores for these two alignments using the given scoring scheme
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