Question: 5 . What is the CIGAR string for the alignment of this read? ( 4 points ) Read: ACTCGTG - C Genome: TTGAAC - CGTGGCAGTG

5. What is the CIGAR string for the alignment of this read? (4 points)
Read: ACTCGTG-C
Genome: TTGAAC-CGTGGCAGTG
Operation Value Description
M 0 Alignment match (or mismatch)
I 1 Insertion (compared to reference)
D 2 Deletion (from reference)
N 3 Skipped region (compared to reference)
S 4 Soft-clipped region
H 5 Hard-clipped region
P 6 Padding
=7 Sequence match
X 8 Sequence mismatch

Step by Step Solution

There are 3 Steps involved in it

1 Expert Approved Answer
Step: 1 Unlock blur-text-image
Question Has Been Solved by an Expert!

Get step-by-step solutions from verified subject matter experts

Step: 2 Unlock
Step: 3 Unlock

Students Have Also Explored These Related Databases Questions!