Question: Assuming we use the following scoring matrix: A sub G T - A 2 -1-1-1-2 C -12-1-1-2 G -1 -12 -1-2 T -1-1-12-2 --2-2-2-20 Solve

Assuming we use the following scoring matrix: A

sub

G T - A 2 -1-1-1-2 C

-12-1-1-2

G -1 -12 -1-2 T

-1-1-12-2

--2-2-2-20

Solve for the sum of pairs for the following MSA alignment: GATCACTCGTAC -GTCGATCGTAGCTAGC-- --TCGATCGTAGCTAGC-- ----GATCGTGCGTACGTA

Assuming we use the following scoring matrix: A sub G T

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