Question: CODING IN R STUDIO! How can I write a code that computes the number of genes in common for each pair of phenotypes and then

CODING IN R STUDIO!

How can I write a code that computes the number of genes in common for each pair of phenotypes and then store it in a matrix with dimensions N x N where N is the # of phenoypes in the matrix?

Example of data I am working with:

A B C D E F G H I J K L M N
Gene1 0 0 0 0 1 0 1 1 1 0 0 0 0 0
Gene2 1 0 0 0 0 0 0 0 0 1 0 0 1 0
Gene3 0 0 1 1 0 0 0 0 1 0 0 1 0 0
Gene4 0 1 1 0 0 0 1 0 0 0 1 1 0 1
Gene5 1 0 0 0 1 1 0 0 0 0 0 0 1 1
Gene6 0 0 1 1 0 0 0 1 1 0 0 0 0 0
Gene7 0 0 0 0 1 0 0 0 1 1 0 0 1 0
Gene8 0 0 0 0 0 0 1 0 0 0 0 1 0 0
Gene9 1 0 1 0 0 0 0 1 0 0 0 0 0 1

'1' means that the gene has the phenotype, '0' means that the gene does not have it.

Step by Step Solution

There are 3 Steps involved in it

1 Expert Approved Answer
Step: 1 Unlock blur-text-image
Question Has Been Solved by an Expert!

Get step-by-step solutions from verified subject matter experts

Step: 2 Unlock
Step: 3 Unlock

Students Have Also Explored These Related Databases Questions!