Question: First, create a command that will format a BLAST database for the starfish genome, which is in the file starfish_genome.fasta. Your command should input this

First, create a command that will format a BLAST database for the starfish genome, which is in the file starfish_genome.fasta. Your command should input this sequence and properly specify that you are working with a DNA sequence.

Next, Write a command to blast a transcript sequence called "hox1a.fasta" to the genome database you created. Your blast command should specify a special gap penalty, where the "gap open" parameter is 20 and the "gap extend" parameter is 2. You should also properly specify which database your blasting to.

Step by Step Solution

There are 3 Steps involved in it

1 Expert Approved Answer
Step: 1 Unlock blur-text-image
Question Has Been Solved by an Expert!

Get step-by-step solutions from verified subject matter experts

Step: 2 Unlock
Step: 3 Unlock

Students Have Also Explored These Related Databases Questions!