Question: given the following two alignments, find the optimal one assuming a penalty of 1 for a mismatch and a penalty of 2 for a gap.

given the following two alignments, find the optimal one assuming a penalty of 1 for a mismatch and a penalty of 2 for a gap. Then solve it again assuming a penalty of 2 for a mismatch and 1 for a gap.

C C G G G T T A C C A

- G G A G T T - C - A

C C G G G T T A C C A

- - G G A G T T C - A

Step by Step Solution

There are 3 Steps involved in it

1 Expert Approved Answer

Step: 1 Unlock blur-text-image

Question Has Been Solved by an Expert!

Get step-by-step solutions from verified subject matter experts

Step: 2 Unlock

Step: 3 Unlock

Students Have Also Explored These Related Databases Questions!

given the following two alignments, find the optimal one assuming a penalty of 1 for a mismatch and a penalty of 2 for a gap. Then solve it again assuming a penalty of 2 for a mismatch and 1 for a...

Assuming a penalty of 1 for a mismatch and a penalty of 2 for a gap, use the dynamic programming algorithm to find an optimal alignment of the following sequence. 6. AGTACCA AAGCTCC Assuming a...

Please solve this question. 3. Assuming a penalty of 1 for a mismatch and a penalty of 2 for a gap, use the dynamic programming algorithm to find an optimal alignment of the following sequences: CC...

PRBLEM DESCRIPTION: A steel manufacturer runs a foundry and two mills. The foundry casts three types of steel rolls that are machined in its machine shop before being shipped to the mills. Machined...

Assuming a penalty of 1 for a mismatch and a penalty of 2 for a gap, use the dynamic programming algorithm to find an optimal alignment of the following sequence AGTACCA AAGCTCC

PRINTABLE VERSION Practice Final Exam Question 1 Give the slope of the line passing through the points ( 2 , -5 ) and ( 2 , -3 ). a) b) c) d) e) f) None of the above. Question 2 Give the equation of...

HW #8 (Fault Simulation) EE 623 1. Assume you have developed an efficient table-driven event-directed logic simulation system. Consider a fan-out free circuit C having n input lines, m output line, g...

A trust officer at the Blacksburg National Bank needs to determine how to invest $100,000 in the following collection of bonds to maximize the annual return. Bond Yield Maturity Risk Task free A...

CSC 110 - Homework 9 - Bioinformatics We have seen the code in class that finds all alignments between a pair of sequences by adding gaps to the shorter sequence. You can find a version of that code...

Make the following changes to the code in PYTHON IDLE 3.5 nothing else . Please be very descriptive and make sure you complete both parts, Thank you! Code for all alignments between a pair of...

Distinctive Designs, Inc., imports and distributes dress and sports watches. At the end of the company's fiscal year, brand manager Charlie Pace has asked you to evaluate sales of the sports watch...

13. Which of the following factors influences the volume flow rate (ml/h) of the gravity infusion Choose the right answers Phydrostatisch Pvens Bild 4.1: Prinzip der Schwerkraftinfusion - Height...

Income Statement Income Gross sales 5750000 Sales returns and allowances 200000 Net sales 5550000 Cost of goods sold 23003 Gross profit 3900000 Dividends received from stock investments in lessthan20...

Problem 17-06 The Global Growth Fund is a load fund with a 5 percent front load fee. It started the year with a net asset value (NAV) of $16.40. During the year the fund distributed $1.25, and at the...

To whom might an entrepreneur present his or her business plan? Why? (Objective 4)

Assume you want to start a business in the community in which your school is located. What resources are available to youlocally or through the Internetas you approach the task of drafting a business...

A student organization to which you belong recently returned from its national conference. One of the highlights of the conference was announcement of Chapter of the Yearand your group won! Prepare...