Global alignment

For this exercise, we will assign a match score of $1,$ a mismatch score of $0,$ and a gap penalty of $-1.$

Let's work with the following sequences:

A TCG

and

T C G

$($Q$1)$ Substitution matrix

$\backslash$table$[[,$A$,$C$,$G$,$T$],[$A$,,,,],[$C$,,,,],[$G$,,,,],[$T$,,,,]]$

$($Q$2)$ Scoring matrix

$\backslash$table$[[,,$T$,$C$,$G$],[,,,,],[$A$,,,,],[$T$,,,,],[$C$,,,,],[$G$,,,,]]$

$\backslash$table$[[,,$A$,$T$,$C$,$G$],[,,,,,],[$T$,,,,,],[$C$,,,,,],[$G$,,,,,]]$

$($Q$3)$

Alignment