Question: I m a beginner in survival analysis, working with a Cox model using a deep neural network ( DNN ) . I want to predict
Im a beginner in survival analysis, working with a Cox model using a deep neural network DNN I want to predict and visualize lowrisk and highrisk groups based on the model's predictions. Here are my specific questions:
Calculations for Model Prediction:
How can I calculate risk scores for each sample using a Cox model with DNNWhat are the formulas and steps for calculating the cumulative baseline hazard, particularly with the Breslow method? Could you break down each part in detail?Could you provide example code in Python for calculating both the risk scores and cumulative baseline hazard?
Visualization of Predicted Risk Groups:
Once I have risk scores and the cumulative baseline hazard, how can I create a plot that visualizes the model's predicted lowrisk and highrisk groups?Could you provide sample code specifically for plotting these modelpredicted risk groups?
LogRank Test for Predicted Risk Groups:
How do I use the logrank test to compare the survival curves between the predicted highrisk and lowrisk groups?Could you include code for performing the logrank test in Python to calculate the pvalue for these predicted risk groups?
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