Question: In C++ Implement Brute Force Median String Search algorithm [No need to use a tree]. Test the given algorithm for the cases of 4-mer, 5-mer
In C++
Implement Brute Force Median String Search algorithm [No need to use a tree]. Test the given algorithm for the cases of 4-mer, 5-mer and 6-mer with the given Sequences.fa file.
Test Case 1:
For sequences in Sequences.fa, the motif of length = 4 is GATC
Test Case 2: For sequences in Sequences.fa, the motif of length = 5 is CCGAA
Test Case 3: For sequences in Sequences.fa, the motif of length = 6 is TCCGAA
Sequence .fa
>1 TAGTGGTCTTTTGAGTGTAGATCTGAAGGGAAAGTATTTCCACCAGTTCGGGGTCACCCAGCAGGGCAGGGTGACTTAAT >2 CGCGACTCGGCGCTCACAGTTATCGCACGTTTAGACCAAAACGGAGTTGGATCCGAAACTGGAGTTTAATCGGAGTCCTT >3 GTTACTTGTGAGCCTGGTTAGACCCGAAATATAATTGTTGGCTGCATAGCGGAGCTGACATACGAGTAGGGGAAATGCGT >4 AACATCAGGCTTTGATTAAACAATTTAAGCACGTAAATCCGAATTGACCTGATGACAATACGGAACATGCCGGCTCCGGG >5 ACCACCGGATAGGCTGCTTATTAGGTCCAAAAGGTAGTATCGTAATAATGGCTCAGCCATGTCAATGTGCGGCATTCCAC >6 TAGATTCGAATCGATCGTGTTTCTCCCTCTGTGGGTTAACGAGGGGTCCGACCTTGCTCGCATGTGCCGAACTTGTACCC >7 GAAATGGTTCGGTGCGATATCAGGCCGTTCTCTTAACTTGGCGGTGCAGATCCGAACGTCTCTGGAGGGGTCGTGCGCTA >8 ATGTATACTAGACATTCTAACGCTCGCTTATTGGCGGAGACCATTTGCTCCACTACAAGAGGCTACTGTGTAGATCCGTA >9 TTCTTACACCCTTCTTTAGATCCAAACCTGTTGGCGCCATCTTCTTTTCGAGTCCTTGTACCTCCATTTGCTCTGATGAC >10 CTACCTATGTAAAACAACATCTACTAACGTAGTCCGGTCTTTCCTGATCTGCCCTAACCTACAGGTCGATCCGAAATTCG
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