Question: please help me with this :) 2. Consider again the Nuu-Chah-Nulth data (shown below in Figure 1), taken from Ward et al. (1991) Extensive mitochondrial

please help me with this :)

please help me with this :) 2. Consider again the Nuu-Chah-Nulth data(shown below in Figure 1), taken from Ward et al. (1991) "Extensive

2. Consider again the Nuu-Chah-Nulth data (shown below in Figure 1), taken from Ward et al. (1991) "Extensive mitochondrial diversity within a single Amerindian tribe." PNAS 88: 8720-8724. The table shows the segregating sites in a sample of DNA sequences. (a) Assuming the infinite sites model of mutation and that the ancestral haplotype is n, estimate the mutation parameter @ using: (i) The number of segregating sites, (ii) The number of singleton sites in the sample, (iii) The number of doubleton sites in the sample, (iv) The total number of singletons and doubletons in the sample. (b) Use Gusfield's algorithm to construct a gene tree from the sequences, taking the ancestral sequence as haplotype k. Sketch the gene tree. 2 (c) Sketch the gene tree if instead the root was on a lineage between the mutations at sites 7 (pos. 91) and 15 (pos. 271).\f

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