Question: Please help work through these two problems and explain, thank you! 21. Two amino acid R-groups are shown below. The pK for the NH2 group

Please help work through these two problems and explain, thank you!

Please help work through these two problems and explain, thank you! 21.Two amino acid R-groups are shown below. The pK for the NH2

21. Two amino acid R-groups are shown below. The pK for the NH2 group is 9.3; the PK for the COOH group is 6.8. Draw the most common form of each R-group at pH 7.4. Can an ionic "bond" form between these two R-groups at pH 7.4? CH2 1 CH2 1 Cha 1 c- Cha OH cha NH2 22. The figure below shows the structure of a non-steroidal anti-inflammatory agent known as flurbiprofen in the binding pocket of a cyclooxygenase enzyme (protein). R-groups from amino acids labeled A, B and C help the enzyme bind specifically to the flurbiprofen. Select an amino acid from those in Figure 3-2 of your textbook that would aid in binding the enzyme to the flurbiprofen at sites A, B and C, respectively. Note the type of interaction that would occur between the flurbiprofen and the R-group of each amino acid you have selected. Amino Acid selected Type of Interaction Site A Site B Site C CH tools cyclooxygenase enzyme C=0 Group A: Nonpolar Amino Acids (Hydrophobic) H H H H H o o o TO HNT H2N-C-C H2N-C-C HN HN-C-C CH o- 0 0 0 0 H CH CH - CH CH CH CH, CH CH, 1 2 CH, Isoleucine (lle) Alanine (Ala) Glycine (Gly) Valine (Val) Leucine (Leu) H H H H O HN-C-C H2N-C-C HN 51 HN-C-C 0 0 0 0 CH2 CH2 CH 1 CH, HC CH CH, go S . Methionine (Met) Phenylalanine (Phe) Tryptophan (Trp) Proline (Pro) Group B: Polar, Uncharged Amino Acids (Hydrophilic) H H H H H H 0 0 O o F HAN C-6 H,N HEN-C- H2N-C- H2N-C-C =0 HN+ -c-c o 0 0 09 O CH, CH CH CH2 CH2 CH2 OH SH OH C CH2 NH2 o NH, o OH Tyrosine (Tyr) Serine (Ser) Threonine (Thr) Cysteine (Cys) Asparagine (Asn) Glutamine (Gln) Group C: Polar, Charged Amino Acids (Hydrophilic) Acidic Basic H H 0 0 HN C- H2N-C-C C-C HNT HEN H2N-C-C CH2 0 0 0 0 O CH2 CH CH 1 NH CH2 CH, $_$_$_I_ FO 0 Nund on our CH2 -NH O CH2 NH NH3 C=NH, NH, Arginine (Arg) Aspartate (Asp) Glutamate (Glu) Lysine (Lys) Histidine (His) FIGURE 3-2 The Structures of the 20 Amino Acids Found in Proteins. All amino acids have a carboxyl group and an amino group attached to the central (a) carbon, but each has its own distinctive R group (light boxes). Those in Group A have nonpolar R groups and are therefore hydrophobic; notice the hydrocarbon nature of their R groups. The others are hydrophilic, either because the R group is polar (Group B) or because the R group is protonated or deprotonated at cellular pH and thus carries a formal electrostatic charge (Group C). Notice the unusual structure of proline-its R group is covalently linked to the amino nitrogen

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