Question: ( Solve it manually no coding needed ) Write a program to perform multiple alignment for a set of sequences. Your program should align the
Solve it manually no coding neededWrite a program to perform multiple alignment for a set of sequences. Your program should align the sequences using the given scoring table. The scoring table indicates the alignment score between characters or gaps Write the final aligned sequences in such a way that their lengths are equal, and they maintain the full alignment pattern of all sequences together with gaps where necessary
Scoring Table:Algorithm for Multiple Sequence AlignmentRequirements:A set S of sequences.
Objective:
To obtain a multiple alignment with the sum of pairwise distances being at most twice the optimal alignment of
Steps:
Calculate pairwise distances :
For every sequence Si and Sj in S
Find the center sequence Sc:
Choose Sc such that it minimizes
Align all sequences to the center sequence :
For every Si in S Sc:
a Choose an optimal alignment between Sc and Si
b Add gaps in Si such that M the final multiple alignment, satisfies the alignments obtained in this step.
Modified Example Input Data:
ACCCTGAACC
ACTCGGAGC
CTGGAATCT
GCTAGGACC
Step by Step Solution
There are 3 Steps involved in it
1 Expert Approved Answer
Step: 1 Unlock
Question Has Been Solved by an Expert!
Get step-by-step solutions from verified subject matter experts
Step: 2 Unlock
Step: 3 Unlock
