Question: Using Java or C, C# Write a program that solves the Local Sequence Alignment problem using dynamic programming. (20 points) The input includes strings v,

 Using Java or C, C# Write a program that solves the Using Java or C, C#

Write a program that solves the Local Sequence Alignment problem using dynamic programming. (20 points) The input includes strings v, w and a scoring matrix ?. The output is an alignment of v and w whose score (as defined by the matrix ) is maximal among all possible alignments of v and w. 1. Run your program to find the optimal local alignment for 1213434222 and 1343422421 under the match premium +1, mismatch penalty -1, and indel penalty -0.5

Step by Step Solution

There are 3 Steps involved in it

1 Expert Approved Answer
Step: 1 Unlock blur-text-image
Question Has Been Solved by an Expert!

Get step-by-step solutions from verified subject matter experts

Step: 2 Unlock
Step: 3 Unlock

Students Have Also Explored These Related Databases Questions!