Question: Write a Python program that reads a pdb file ( either saved in the personal computer or fetch it from online servers like www .

Write a Python program that reads a pdb file (either saved in the personal computer or fetch it from online servers like www.rcsb.org),the two options should be available to the user. If the user chooses to download the pdb file directly from online, s/he should be able to provide the ID of the protein and chain ID.
Your program should be able to find the following (implement it as a menu):
9. Given a text file called sequences.txt that contains a list of IDs for proteins and a target chain, your program should globally align the chain of the protein against all chains in the list, one at a time, and report the alignment score and identity percentage. Use Blosum62scoring matrix and gap score=-2.
9. Given a text file called sequences.txt that contains a list of IDs for proteins and a target chain, your python program should globally align the chain of the protein against all chains in the list, one at a time, and report the alignment score and identity percentage. Use Blosum62 scoring matrix and gap score=-2

Step by Step Solution

There are 3 Steps involved in it

1 Expert Approved Answer
Step: 1 Unlock blur-text-image
Question Has Been Solved by an Expert!

Get step-by-step solutions from verified subject matter experts

Step: 2 Unlock
Step: 3 Unlock

Students Have Also Explored These Related Programming Questions!