Question: Implement a pairwise sequence alignment using recursion, to align the gene names CRY in mouse (Mus musculus) and green peas (Pisum sativum). This gene exists
Implement a pairwise sequence alignment using recursion, to align the gene names CRY in mouse (Mus musculus) and green peas (Pisum sativum). This gene exists in both of these species. In order to find the sequence of the gene in different species, follow these steps:
1.) Go to https://www.ncbi.nlm.nih.gov/
2.) Search cry in the search box, but limit the database to Protein.
3.) Now you see the CRY in different species. Select the species mentioned above.
4.) Click on FASTA to find the sequence of the gene.
5.) Now feed these two sequences into your implemented global sequence alignment.
6.) In the alignment, allow mismatch with the penalty of -1, and gap with penalty of -1. And reward the match with +1.
Feel free to use any libraries in the language of your preference. You can also use an already implemented algorithm code, as log as you can set up the scoring as suggested, thanks.
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