Question: Longest Common Subsequence - Write the code for computing the longest common subsequence. Using this code find the LCS between each pair of protein sequence:
Longest Common Subsequence - Write the code for computing the longest common subsequence. Using this code find the LCS between each pair of protein sequence:
>tulp3_hs MEASRCRLSPSGDSVFHEEMMKMRQAKLDYQRLLLEKRQRKKRLEPFMVQPNPEARLRRAKPRASDEQTPLVNCHTPHSNVILHGIDGPAAVLKPDEVHAPSVSSSVVEEDAENTVDTASKPGLQERLQKHDISESVNFDEETDGISQSACLERPNSASSQNSTDTGTSGSATAAQPADNLLGDIDDLEDFVYSPAPQGVTVRCRIIRDKRGMDRGLFPTYYMYLEKEENQKIFLLAARKRKKSKTANYLISIDPVDLSREGESYVGKLRSNLMGTKFTVYDRGICPMKGRGLVGAAHTRQELAAISYETNVLGFKGPRKMSVIIPGMTLNHKQIPYQPQNNHDSLLSRWQNRTMENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDYIVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE
>tulp3_ms MEAARCAPGPRGDSAFDDETLRLRQLKLDNQRALLEKKQRKKRLEPLMVQPNPEARLRRLKPRGSEEHTPLVDPQMPRSDVILHGIDGPAAFLKPEAQDLESKPQVLSVGSPAPEEGTEGSADGESPEETAPKPDLQEILQKHGILSSVNYDEEPDKEEDEGGNLSSPSARSEESAAASQKAASETGASGVTAQQGDAQLGEVENLEDFAYSPAPRGVTVKCKVTRDKKGMDRGLFPTYYMHLEREENRKIFLLAGRKRKKSKTSNYLVSTDPTDLSREGESYIGKLRSNLMGTKFTVYDHGVNPVKAQGLVEKAHTRQELAAICYETNVLGFKGPRKMSVIIPGMNMNHERIPFRPRNEHESLLSKWQNKSMENLIELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGNDPDYIVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE
>tulp3_gg20 MEGARSRCVLSGGSIFEDEGMKLRQLKLENQRALLEKKQKKKRLDPLMVQPNPEAKLHRSKPKGFEEQTPLVETPTTFHSAVVLHGIDRPVSFLKSEVQDLGNKLQTFSVGSSITAENADEENNGHVLTETLRNAHLQEILQKRGISGSLNFDEEDTEEEEEVSKRPASQSPHPESERPSSATIKKSFAEIGASCSPSHQTVAHLGEVENLEEFALRPAPHGITVKCRITRDKKGMDRGLFPTYYMHLEKDNNRKMFLLAGRKRKKSKTSNYIISVDPTDLSREGESFIGKLRSNLMGTKFTVYDHGVSPIKAQGEVEKAHTRQELAAVYYETNVLGFKGPRKMSVIIPGMNMHHKRIPVQPRNPENESLLSKWQTKDLENLIELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHDNDPDYIVMQFGRVAEDVFTLDYNYPLCALQAFAIGLSSFDSKLACE
>tulp3_xt MERTGERSGGTSMFEDESARLRHLKLENQRTLLEQKQRKKRQEILMVQSNRDTRQRRPKSGKCEEQAPLVQSQKQKSVNCNVILNGIDGPAAFLDSGFHELDSKIQVLTVGESCTDTDFNVGTGWPSCNEGRASPCNSERRGTPVSDEENTQPLNSIGRSNLEKTQQNSNRQEILRKPDVSKRDLQELLQERGISDSLNFDEDISDDDDGDDDDEACNASTRPASASSKKSLTETGTAEAVPPDPSGDIGEIGDLKEFALRPAPRGVVIKTRISRDKKGMDRGLYPTYYMHLERDNNRKVFLLAGRKRKRSKTSNYLISIDPTDLSREGGNFIGKLRSNLMGTKFTIYDNGESPAKVQGHMSNPTTRQEMAAVCYETNVLGFKGPRKMTVLIPGMNLNHERIPFQPQNDSESLLSRWGNKCQENIIELHNKAPVWNDDTQSYVLNFHGRVTHASVKNFQIVHDNDPDYIVMQFGRVAEDFFTLDYSYPLCALQAFSVALSSFDSKLACE
Question: Based on the length of the LCS, create groups of organisms, where organisms in the same group will have longer LCS. Describe clearly the algorithm/software that you used to compute the groups. Show the groups.
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