Problem 1 - Global Alignment (10pts) Find the optimal global alignment of ACG and AACT with...
Fantastic news! We've Found the answer you've been seeking!
Question:
Transcribed Image Text:
Problem 1 - Global Alignment (10pts) Find the optimal global alignment of ACG and AACT with Scoring rules as: match = 1, mismatch = 0, gap penalty d=1. You need to fill in the remaining cells in Figure 1 and show the optimal alignment. Note that some cells in the figure have two arrows, denoting two different ways that cell was calculated A C G 0-1 -2 -3 A-11 0₂ -1 A -2 ₁0 1¹. 0 C-3 1-1 1 1 ¹, ¹. 1 T-4 Figure 1: Global Alignment Problem 1 - Global Alignment (10pts) Find the optimal global alignment of ACG and AACT with Scoring rules as: match = 1, mismatch = 0, gap penalty d=1. You need to fill in the remaining cells in Figure 1 and show the optimal alignment. Note that some cells in the figure have two arrows, denoting two different ways that cell was calculated A C G 0-1 -2 -3 A-11 0₂ -1 A -2 ₁0 1¹. 0 C-3 1-1 1 1 ¹, ¹. 1 T-4 Figure 1: Global Alignment Problem 1 - Global Alignment (10pts) Find the optimal global alignment of ACG and AACT with Scoring rules as: match = 1, mismatch = 0, gap penalty d=1. You need to fill in the remaining cells in Figure 1 and show the optimal alignment. Note that some cells in the figure have two arrows, denoting two different ways that cell was calculated A C G 0-1 -2 -3 A-11 0₂ -1 A -2 ₁0 1¹. 0 C-3 1-1 1 1 ¹, ¹. 1 T-4 Figure 1: Global Alignment Problem 1 - Global Alignment (10pts) Find the optimal global alignment of ACG and AACT with Scoring rules as: match = 1, mismatch = 0, gap penalty d=1. You need to fill in the remaining cells in Figure 1 and show the optimal alignment. Note that some cells in the figure have two arrows, denoting two different ways that cell was calculated A C G 0-1 -2 -3 A-11 0₂ -1 A -2 ₁0 1¹. 0 C-3 1-1 1 1 ¹, ¹. 1 T-4 Figure 1: Global Alignment
Expert Answer:
Answer rating: 100% (QA)
To find the optimal global alignment of the sequences ACG and AACT with the given scoring rules match 1 mismatch 0 gap penalty d 1 you can use dynamic ... View the full answer
Related Book For
Introduction to Management Science A Modeling and Cases Studies Approach with Spreadsheets
ISBN: 978-0078024061
5th edition
Authors: Frederick S. Hillier, Mark S. Hillier
Posted Date:
Students also viewed these programming questions
-
Three polarizing plates whose planes are parallel are centered on a common axis. The directions of the transmission axes relative to the common vertical direction are shown in Figure. A linearly...
-
Lifecycle costing increases the price of commodities, contributing to inflation in the process. What do you think the proper tradeoff is in this situation?
-
If you were working in public relations in the banking industry, what are the three issues you would want your company to address?
-
In Problems 1158, perform the indicated operation, and write each expression in the standard form a + bi. i 7 (1 + i 2 )
-
Marie Cornu, a physicist at the Polytechnic Institute in Paris, invented phasors in about 1880. This problem helps you to see their utility. Find the amplitude and phase constant of the sum of two...
-
Describe how a biparental pattern of extranuclear inheritance would resemble a Mendelian pattern of inheritance for a particular gene. How would they differ?
-
Tail lengths (in feet) for a sample of American alligators are listed. (a) Find the mean, median, and mode of the tail lengths. Which best describes a typical American alligator tail length? Explain...
-
The Association of Women in Government established an Educational Foundation to raise money to support scholarship and other education initiatives. The Educational Foundation is a private...
-
Solve the initial value problem dy(x)+3a y(x) = cos (5x) e (-23). y(x)= y (0)=-1
-
Which series has the highest beta. BraveNewCoin Liquid Index for Bitcoin 1D BNC Trading Brave Ne Yellow Green Blue Orange
-
Charts to be included in an internal coding audit can be identified from multiple sources. What records could potentially be identified in an audit from accounts receiving aging or collection...
-
Need a single Linux pipeline command to display the number of files in your current directory that match the pattern "linux". Not allowed to use the -c option with the Linux command for pattern...
-
You have been volunteered to oversee the graduation party at the end of the semester. Since the cost of the party is important and keeping costs down is imperative you need to pick 4 possible sites...
-
6. You plan to purchase a new car with a total purchase price of $26,500. You intend to make a down payment of $3,500, and take out a loan for the remainder. The car loan has an APR of 3.52% and the...
-
Evaluate different operating systems explaining their role in managing resources. -Operating systems: the role of an operating system, OS types
-
What are the main differences between the user-kernel threads models? Which one of these models is likely to trash the system if used without any constraints?
-
Accounts receivable arising from sales to customers amounted to $85,000 and $75,000 at the beginning and end of the year, respectively. Income reported on the income statement for the year was...
-
Suppose that the electrical potential at the point (x, y, z) is E(x, y, z) = x + y - 2z. What is the direction of the acceleration at the point (1,3,2)?
-
Reconsider the Goferbroke Co. case study, including the application of utilities in Section 9.9. Max Flyer now has decided that, given the company's precarious financial situation, he needs to take a...
-
A young couple, Eve and Steven, want to divide their main household chores (marketing, cooking, dishwashing, and laundering) between them so that each has two tasks but the total time they spend on...
-
Formulate and solve a spreadsheet model for the maximum flow problem shown at the top of the next column, where node A is the source, node F is the sink, and the arc capacities are the numbers in...
-
With reference to Exercise 4.58, find the probabilities that the time between successive requests for consulting will be (a) less than 0.5 week; (b) more than 3 weeks. Data From Exercise 4.58 4.58 A...
-
Suppose the proportion of error in code developed by a programmer, which varies from software to software, may be looked upon as a random variable having the beta distribution with \(\alpha=2\) and...
-
Use the result of Exercise 5.61 to find an expression for the probability density of the waiting time between successive arrivals. Data From Exercise 5.61 5.61 Given a Poisson process with on the...
Study smarter with the SolutionInn App