Question: Take your query from the previous question and add columns to show what 'assembly' feature type the polypeptides are located on, as well as the
Take your query from the previous question and add columns to show what
'assembly' feature type the polypeptides are located on, as well as the fmin, fmax and strand
coordinates of each row. Again, attach your query and result rows as a text file to your
homework submission.
so far I have:
SELECT f.uniquename, product.value AS product, srcassembly.name, location.fmin, location.fmax, location.strand
FROM feature f
JOIN cvterm polypeptide ON f.type_id = polypeptide.cvterm_id
JOIN featureprop product ON f.feature_id = product.feature_id
JOIN cvterm productprop ON product.type_id = productprop.cvterm_id
JOIN featureloc location ON f.feature_id = location.feature_id
JOIN feature srcfeature ON location.srcfeature_id = srcfeature.feature_id
JOIN cvterm srcassembly ON srcfeature.type_id = srcassembly.cvterm_id
WHERE polypeptide.name = 'polypeptide'
AND productprop.name = 'gene_product_name'
And product.value like '%bifunctional%'
order by product.value;
I still need a uniquename collumn for assemly feature type.
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