Question: Using Python Calculate the Jaccard index between the genomes, for k- (4, 8, 12). Do this for unique mers and accounting for mer frequency 4.

Using Python Calculate the Jaccard index between the genomes, for k- (4, 8, 12). Do this for unique mers and accounting for mer frequency Using Python

4. fasta 1.fasta NC 003997.3 Bacillus anthracis str. Ames chromosome, complete genome

Calculate the Jaccard index between the genomes, for k- (4, 8, 12). Do this for unique mers and accounting for mer frequency 4. fasta 1.fasta NC 003997.3 Bacillus anthracis str. Ames chromosome, complete genome ATATTTTTTCTTGTTTTTTATATCCACAAACTCTTTTCGTACTTTTACACAGTATATCGTGTTGTGGACA ATTTTATTCCACAAGGTATTGATTTTGTGGATAACTTTCTTAATTTCATTGCTATAGCTACTTTTTTTTG ATATTATAGTTGTGTTTTCACTTTGAATAAGTTTTC CAC ATC CACAATTTGTGTATAAC ATGTGGACAGTTTTAATCACATGTGGGTAAATGATTATCCACATTTGCTTTTTTGTCGAAAACCCTATCT CATATACAAACGACGTTTTTAGGTTTTAAAATACGTTTCGTATAAATATACATTTTATATTTATTCAGGT TGTACATTTGTTGCACAACCTTATTCTTTTACCATCTTAGTAAAGGAGGGACACCTTTGGAAAACATCTO TGATTTATGGAACAGCGCCTTAAAAGAACTCGAAAAAAAGGTCAGTAAACCAAGTTATGAAACATGGTTA AAATCAACAACCGCACATAATTTAAAGAAAGATGTATTAACAATTACGGCTCCAAATGAATTCGCCCGTG ATTGGTTAGAATCTCATTATTCAGAGCTAATTTCGGAAACACTTTATGATTTAACGGGGGCAAAATTAGC TATTCGCTTTATTATTCCCCAAAGTCAAGCTGAAGAGGAGATTGATCTTCCTCCTGCTAAACCAAATGCA GCACAAGATGATTCTAATCATTTACCACAGAGTATGCTAAACCCAAAATATACGTTTGATACATTTGTTA TTGGCTCTGGTAACCGTTTTGCTCACGCTGCTTCATTGGCCGTAGCCGAAGCGCCAGCTAAAGCATATAA TCCCCTCTTTATTTATGGGGGAGTTGGACTTGGAAAAACCCATTTAATGCATGCAATTGGCCATTATGTA ATTGAACATAACCCAAATGCCAAAGTTGTATATTTATCATCAGAAAAATTTACAAATGAATTCATTAATT GTGATAATAAAG CGGTC GATTTTCGTAATAAATACC GCAATGTAGATGTTTTATTGATAGATGA TATTCAATTTTTAGCGGGAAAAGAACAAACTCAAGAAGAGTTTTTCCATACATTCAATGCATTACACGAA GAAAGTAAACAAATTGTAATTTCCAGTGATCGGCCACCAAAAGAAATTCCAACTTTAGAAGATCGTCTTC GTTCTCGCTTTGAATGGGGACTCATTACGGATATTACGCCACCAGATTTAGAAACACGAATTGCGATTTT ACGTAAAAAGGCAAAGGCTGAAGGACTTGATATACCAAATGAGGTCATGCTTTATATCGCAAATCAAATC GATTCAAATATTCGTGAACTAGAAGGTGCACTCATCCGCGTTGTAGCTTATTCATCTTTAATTAACAAGG ATATTAATGCTGATTTAGCAGCTGAAGCACTTAAAGATATTATTCCAAATTCTAAACCAAAAATTATCTO CATTTATGATATTCAAAAAGCTGTTGGAGATGTTTATCAAGTAAAATTAGAAGATTTCAAGGCGAAAAAG CGCACAAAGTCAGTTGCCTTTCCTCGCCAAATTGCAATGTATTTGTCACGCGAACTGACAGATTCCTCCT TACCTAAAATAGGTGAAGAATTTGGTGGACGTGATCATACAACCGTTATCCATGCCCATGAAAAAATTTC TAAGCTACTTAAGACGGATACGCAATTACAAAAACAAGTTGAAGAAATTAACGATATTTTAAAGTAGTAG CTGAATAGTGTGAATAACTTCCCTTGTTTTACGCACAGTCTATCCACATGTAGATAGACTGTTTTTACAT GGGGTTATC CAC ATATC CAC AAGCCCTATTAC TATTAC TAC TATTTTTTATCTTTATTAATT AATAAAATCTTATACTTACCGGAGGTTCTTCTTTATGCGTTTTTCAATTCAAAAAGACTATCTTGTAAG AAGTGTACAAGATGTAATGAAGGCTGTTTCTTTTCGTACAACAATTCCGATCCTTACAGGAATTAAAGTT Calculate the Jaccard index between the genomes, for k- (4, 8, 12). Do this for unique mers and accounting for mer frequency 4. fasta 1.fasta NC 003997.3 Bacillus anthracis str. Ames chromosome, complete genome ATATTTTTTCTTGTTTTTTATATCCACAAACTCTTTTCGTACTTTTACACAGTATATCGTGTTGTGGACA ATTTTATTCCACAAGGTATTGATTTTGTGGATAACTTTCTTAATTTCATTGCTATAGCTACTTTTTTTTG ATATTATAGTTGTGTTTTCACTTTGAATAAGTTTTC CAC ATC CACAATTTGTGTATAAC ATGTGGACAGTTTTAATCACATGTGGGTAAATGATTATCCACATTTGCTTTTTTGTCGAAAACCCTATCT CATATACAAACGACGTTTTTAGGTTTTAAAATACGTTTCGTATAAATATACATTTTATATTTATTCAGGT TGTACATTTGTTGCACAACCTTATTCTTTTACCATCTTAGTAAAGGAGGGACACCTTTGGAAAACATCTO TGATTTATGGAACAGCGCCTTAAAAGAACTCGAAAAAAAGGTCAGTAAACCAAGTTATGAAACATGGTTA AAATCAACAACCGCACATAATTTAAAGAAAGATGTATTAACAATTACGGCTCCAAATGAATTCGCCCGTG ATTGGTTAGAATCTCATTATTCAGAGCTAATTTCGGAAACACTTTATGATTTAACGGGGGCAAAATTAGC TATTCGCTTTATTATTCCCCAAAGTCAAGCTGAAGAGGAGATTGATCTTCCTCCTGCTAAACCAAATGCA GCACAAGATGATTCTAATCATTTACCACAGAGTATGCTAAACCCAAAATATACGTTTGATACATTTGTTA TTGGCTCTGGTAACCGTTTTGCTCACGCTGCTTCATTGGCCGTAGCCGAAGCGCCAGCTAAAGCATATAA TCCCCTCTTTATTTATGGGGGAGTTGGACTTGGAAAAACCCATTTAATGCATGCAATTGGCCATTATGTA ATTGAACATAACCCAAATGCCAAAGTTGTATATTTATCATCAGAAAAATTTACAAATGAATTCATTAATT GTGATAATAAAG CGGTC GATTTTCGTAATAAATACC GCAATGTAGATGTTTTATTGATAGATGA TATTCAATTTTTAGCGGGAAAAGAACAAACTCAAGAAGAGTTTTTCCATACATTCAATGCATTACACGAA GAAAGTAAACAAATTGTAATTTCCAGTGATCGGCCACCAAAAGAAATTCCAACTTTAGAAGATCGTCTTC GTTCTCGCTTTGAATGGGGACTCATTACGGATATTACGCCACCAGATTTAGAAACACGAATTGCGATTTT ACGTAAAAAGGCAAAGGCTGAAGGACTTGATATACCAAATGAGGTCATGCTTTATATCGCAAATCAAATC GATTCAAATATTCGTGAACTAGAAGGTGCACTCATCCGCGTTGTAGCTTATTCATCTTTAATTAACAAGG ATATTAATGCTGATTTAGCAGCTGAAGCACTTAAAGATATTATTCCAAATTCTAAACCAAAAATTATCTO CATTTATGATATTCAAAAAGCTGTTGGAGATGTTTATCAAGTAAAATTAGAAGATTTCAAGGCGAAAAAG CGCACAAAGTCAGTTGCCTTTCCTCGCCAAATTGCAATGTATTTGTCACGCGAACTGACAGATTCCTCCT TACCTAAAATAGGTGAAGAATTTGGTGGACGTGATCATACAACCGTTATCCATGCCCATGAAAAAATTTC TAAGCTACTTAAGACGGATACGCAATTACAAAAACAAGTTGAAGAAATTAACGATATTTTAAAGTAGTAG CTGAATAGTGTGAATAACTTCCCTTGTTTTACGCACAGTCTATCCACATGTAGATAGACTGTTTTTACAT GGGGTTATC CAC ATATC CAC AAGCCCTATTAC TATTAC TAC TATTTTTTATCTTTATTAATT AATAAAATCTTATACTTACCGGAGGTTCTTCTTTATGCGTTTTTCAATTCAAAAAGACTATCTTGTAAG AAGTGTACAAGATGTAATGAAGGCTGTTTCTTTTCGTACAACAATTCCGATCCTTACAGGAATTAAAGTT

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