Question: Using the file foxp2_protein.faa - https://moodle.umass.edu/mod/resource/view.php?id=582284 - do a pairwise sequence alignment between Homo sapiens and Pan troglodytes using Needle at the EBI site -

Using the file foxp2_protein.faa - https://moodle.umass.edu/mod/resource/view.php?id=582284 - do a pairwise sequence alignment between Homo sapiens and Pan troglodytes using Needle at the EBI site - http://www.ebi.ac.uk/Tools/psa/. Save the alignment into a text file (e.g., Text Wrangler, Notepad++, Crimson Editor). Not counting gaps, how many amino acid changes are there between Homo sapiens and Pan troglodytes? Now do the same for the Homo sapiens and Pan troglodytes DNA sequences in foxp2_DNA.fna - https://moodle.umass.edu/mod/resource/view.php?id=582283. Again not counting gaps, how many nucleotids changes are there between Homo sapiens and Pan troglodytes? Are there more nucleotides changes than amino acid changes? Why? Are the gaps in the nucleotide sequences in multiples of 3? Why? Put your answers to these questions in the text file with the alignment.

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