Question: t 0 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 x 0 3.05 2.04 0.34


Consider the following biochemical oscillator model dz dt Cx d+x = y = pht t = k (1-bay) y (1) where rand y

Matlab has some built-in functions for minimizing/maximizing functions. One of them is fminsearch, which


dr dt dy dt yux + c.x  d+x k(1-bxy) 

t020406080100120140160180200220240260280300320340360
x03.052.040.340.630.951.602.271.600.440.751.131.822.200.560.540.861.322.18
y10.280.180.320.380.460.350.220.200.320.400.390.310.220.220.330.400.370.27

 

dx dt dy dt =Y-UX + car2 d+x2 (1 - bry) 

t020406080100120140160180200220240260280300320340360
x03.052.040.340.630.951.602.271.600.440.751.131.822.200.560.540.861.322.18
y10.280.180.320.380.460.350.220.200.320.400.390.310.220.220.330.400.370.27

(b) Use Matlab's lsqcurvefit instead of fminsearch to answer the same question as (a).
 

Consider the following biochemical oscillator model dx cx (1) dt d+x == k (1-bay) dt where x and y are state variables(say protein concentrations) and , c, d, k and b are positive constants. If you are provided time series data for the state variables x = x(t) and y = y(t), then it is mathematically possible to compute estimates for the unknown parameters by minimizing the distance between model predicted values and the data points for each time points. Table 1: Artificial time series data for the model given in Eq.(1) |t0| 20 | 40 | 60 80 100 120 140 160 180 200 220 240 200 250 300-320 340 x 360 0 3.05 2.04 0.34 0.63 0.95 1.60 2.27 1.60 0.44 0.75 1.13 1.82 2.20 0.56 0.54 0.86 1.32 2.18 y 1 0.28 0.18 0.32 0.38 0.46 0.35 0.22 0.20 0.32 0.40 0.39 0.31 0.22 0.22 0.33 0.40 0.37 0.27 1

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To estimate the unknown parameters in Eq 1 from the provided data set we can use either fminsearch or lsqcurvefit in MATLAB Heres the MATLAB code for ... View full answer

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