Question: ( a ) Recall in class that there are two possible ( costs ) penalties: mismatch for 1 and gap for 2 . Now, suppose

(a) Recall in class that there are two possible (costs) penalties: mismatch for 1 and gap
for 2. Now, suppose that the gap penalty is \delta >0 and the mismatch penalty for
lining up xi with yj is \alpha ij >0 if xi = yj and \alpha ij =0 if xi = yj . Please revisit the
sequence alignment problem and derive the recurrence relation for the optimal cost,
c(i, j).

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