Question: ( a ) Recall in class that there are two possible ( costs ) penalties: mismatch for 1 and gap for 2 . Now, suppose
a Recall in class that there are two possible costs penalties: mismatch for and gap
for Now, suppose that the gap penalty is delta and the mismatch penalty for
lining up xi with yj is alpha ij if xi yj and alpha ij if xi yj Please revisit the
sequence alignment problem and derive the recurrence relation for the optimal cost,
ci j
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