Question: You are interested in experimentally determining the ligand binding affinity of a cell-surface receptor with Kd = 10 pM and association rate constant kon =
You are interested in experimentally determining the ligand binding
affinity of a cell-surface receptor with Kd = 10 pM and association rate
constant kon = 105 M1s1. You incubate nine separate cell suspensions
with the following concentrations of fluorescently labeled ligand: 0.1,
0.3, 1.0, 3.0, 10.0, 30.0, 100.0, 300.0, and 1,000.0 pM. Simulate the
binding isotherm (binding curve) you would obtain if you measured
cell-bound fluorescence at the following times: 15 minutes, 1 hour, 4
hours, 16 hours, and 64 hours. You may assume pseudo-first-order
kinetics. Curve-fit each of these five isotherms to obtain an estimate
of Kd. Is it necessary for every sample to reach equilibrium in order to
obtain an accurate Kd estimate?
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